PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family DBB
Protein Properties Length: 181aa    MW: 20301.9 Da    PI: 6.8976
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box217.2e-07443538
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                     C+ + ++e+ +fC  ++  lC+ C  ++H +       H+
  XP_004507520.1  4 QCDVCRKQEALFFCPADEAALCNHCDHTIH-YanklaakHK 43
                    7*****************************.4467777776 PP

2zf-B_box31.73.1e-105695437
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    + C+ ++e ++ lfC+d++  lC++C   +H+       H
  XP_004507520.1 56 PLCDICNERRAYLFCKDDRAILCRECDIPIHRVnelakkH 95
                    78*****************************535555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.495147IPR000315B-box-type zinc finger
CDDcd000211.34E-4347No hitNo description
SMARTSM003361.1E-6447IPR000315B-box-type zinc finger
PfamPF006433.9E-5444IPR000315B-box-type zinc finger
SMARTSM003363.7E-1453100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.29653100IPR000315B-box-type zinc finger
CDDcd000213.39E-956100No hitNo description
PfamPF006431.7E-85696IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MKIQCDVCRK QEALFFCPAD EAALCNHCDH TIHYANKLAA KHKRFSLHHP TSKDTPLCDI  60
CNERRAYLFC KDDRAILCRE CDIPIHRVNE LAKKHNRFLL TGVKLGASSS DATTSNGSEV  120
RNTRSGPSSF SSENVSSTCT FKDNMAWDTV STSSISEYLI ETISGYCMED LFDASYAPNV  180
F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507520.11e-134PREDICTED: B-box zinc finger protein 20-like
SwissprotQ0IGM73e-56BBX20_ARATH; B-box zinc finger protein 20
TrEMBLG7JIM64e-95G7JIM6_MEDTR; Salt tolerance-like protein
STRINGGLYMA11G12060.12e-84(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.12e-57DBB family protein